PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008232850.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TCP
Protein Properties Length: 296aa    MW: 31699.8 Da    PI: 7.869
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008232850.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.71.7e-37581612104
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......k 89 
                     a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++  +       ++ +++      +
  XP_008232850.1  58 APKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVN-------GALKIPtsapdpR 145
                     799*************************************************************88888555211.......1122221112122 PP

             TCP  90 aaksaa.kskksqksa 104
                       ++ + k+k++++s+
  XP_008232850.1 146 PGEDPPdKKKRKRNSN 161
                     2222221222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.9E-3063152IPR005333Transcription factor, TCP
PROSITE profilePS5136927.14164118IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MTMTEKRELE RDQATTSVDL RINGGEESDS EEPAGPSQAL MLAPKDERDV AMPVAVHAPK  60
RASTKDRHTK VEGRGRRIRM PATCAARIFQ LTRELGHKSD GETIRWLLEH AEPAIIAATG  120
TGTVPAIAMS VNGALKIPTS APDPRPGEDP PDKKKRKRNS NSEYVDLNDG VSASAGLAPL  180
TTERHHQQPP TAAVQAVVPQ GVLPMWAIPS NGVVPGAFFM VPSASTQPHI FTFPTTVAAA  240
PFINISARPI SSFVGPSSAS ATTHMAASTA PQTLRDFSLE IYDKKELQFM SGSSNH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9458661e-48EU945866.1 Zea mays clone 288123 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008232850.10.0PREDICTED: transcription factor TCP9
SwissprotO646476e-88TCP9_ARATH; Transcription factor TCP9
TrEMBLM5XRB00.0M5XRB0_PRUPE; Uncharacterized protein (Fragment)
STRINGVIT_15s0048g01150.t011e-104(Vitis vinifera)
STRINGPOPTR_0014s07450.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21183086
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-82TCP family protein